Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs17182818 chr14:74615330 G/T 1.79E-5 178 10.3 27.23 25.4 KM Plot
PCPG rs17182825 chr14:74617630 G/C 4.31E-7 177 25.4 27.78 7.4 KM Plot
PCPG rs17226274 chr16:89850170 C/T 0.000159 177 25.77 20.37 36.37 KM Plot
PCPG rs17226428 chr16:89842884 T/A 0.000168 177 25.87 20.2 36.37 KM Plot
PCPG rs17226498 chr16:89840631 T/C 0.000181 176 25.87 20.2 36.37 KM Plot
PCPG rs17226512 chr16:89839976 T/C 0.000168 177 25.87 20.2 36.37 KM Plot
PCPG rs17226519 chr16:89839854 T/C 0.000168 177 25.87 20.2 36.37 KM Plot
PCPG rs17226554 chr16:89838862 T/C 0.000168 177 25.87 20.2 36.37 KM Plot
PCPG rs17226666 chr16:89835401 G/A 0.000167 177 25.87 20.17 36.37 KM Plot
PCPG rs17226757 chr16:89832693 A/G 0.000167 177 25.87 20.17 36.37 KM Plot
PCPG rs17226841 chr16:89828484 C/T 0.000179 176 25.87 20.17 36.37 KM Plot
PCPG rs17226966 chr16:89825338 A/G 0.000179 176 25.87 20.17 36.37 KM Plot
PCPG rs17226973 chr16:89825248 T/C 0.000179 176 25.87 20.17 36.37 KM Plot
PCPG rs17226980 chr16:89825065 G/A 0.000179 176 25.87 20.17 36.37 KM Plot
PCPG rs17227057 chr16:89816333 C/T 0.000179 176 25.87 20.17 36.37 KM Plot